Extracts annotated regions from the input sequence.
Element type: extract-annotated-sequence
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Translate | Translates the annotated regions if the corresponding annotation marks a protein subsequence. | False | translate | boolean |
| Complement | Complements the annotated regions if the corresponding annotation is located on the complement strand. | False | complement | boolean |
| Split joined | Split joined annotations to single region annotations. | False | split-joined-annotations | boolean |
| Extend left | Extends the resulted regions to left. | 0 | extend-left | numeric |
| Extend right | Extends the resulted regions to right. | 0 | extend-right | numeric |
| Gap length | Inserts a gap of a specified length between the merged locations of the annotation. | 0 | merge-gap-length | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input sequence
Name in Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
| Set of annotations | annotations | annotation-table |
And 1 output port:
Name in GUI: Annotated regions
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |