The element summarizes gene abundance output of StringTie and saves the result into a common tab-delimited text file. The first two columns of the file are "Gene ID" and "Gene name". Each other column contains "FPKM" values for the genes from an input gene abundance file.
Element type: stringtie-gene-abundance-report
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Output file | Specify the name of the output tab-delimited text file. | output-url | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input StringTie gene abundance file(s) url
Name in Workflow File: in
Slots:
| Slot in GUI | Slot in Workflow File | Type |
|---|---|---|
| Input URL | url | string |