The element searches the input sequence for transcription factor binding sites (TFBSs) significantly similar to the specified weight matrix.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Annotate As | Name of the result annotations. | misc_feature |
| Direction | See the description here. | Any |
| Matrix | Path to the profile. | You must specify a value! |
| Min score | Minimum score to detect TFBS. | 85% |
Parameters in Schema File
Type: wsearch
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| key | Annotate As | string |
| matrix | Matrix | string |
| min-score | Min score | numeric |
| strand | Direction | string Available values are:
|