The element gets the message(s) with annotations data and saves the data to the specified file(s) in one of the appropriate formats (GenBank, GTF, etc.).
Element type: write-annotations
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Data storage | Place to store workflow results: local file system or a database. | data-storage | string | |
| Output file | Location of the output data file. If this attribute is set, slot “Location” in port will not be used. | url-out | string | |
| Output file suffix | This suffix will be used for generating the output file name. | url-suffix | string | |
| Existing file | If a target file already exists, you can specify how it should be handled: either overwritten, renamed, or appended (if supported by file format). | Rename | write-mode | numeric Available values are:
|
| Document format | Document format of the output file. | genbank | document-format | string Available values are:
|
| Merge annotations table | If true all annotation tables from the dataset will be merged into one. The value of the Annotation table name parameter will be used as the name of the result annotation table. | False | merge | boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input annotations
Name in Workflow File: in-annotations
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table-list |
| Sequence | sequence | sequence |
| Source URL | url | string |