Child pages
  • Aligning with ClustalW
Skip to end of metadata
Go to start of metadata

Task Name: align-clustalw

Multiple sequence alignment with ClustalW.

ClustalW is used as an external tool and must be installed on your system.


toolpath — path to the ClustalW executable. By default, the path specified in the Application Settings is applied. [String, Optional, Default: “default”]

tmpdir — directory for temporary files. [String, Optional]

in — semicolon-separated list of input files. [String, Required]

out — output file. [String, Required]

format — format of the output file. [String, Optional]


ugene align-clustalw  --in=COI.aln --out=COI.sto --format=stockholm
  • No labels