| Menu | Description |
|---|---|
| File | A set of project level operations. Example: create, open, etc. a project; open a document; access remote database to download a file. |
| Actions | Various actions associated with the active window. Example: export, remove, edit, analyze a sequence using different plugins (for the Sequence View); edit, align, change the consensus mode (for the Alignment Editor). |
| Settings | Application, plugins and tools settings. |
| Tools | Various tools, independent of an active window. This menu is extended by different plugins. Example: HMMER2 / HMMER3 tools, SITECON, Workflow Designer. |
| Window | A list of active windows and basic manipulations with the windows. Example: close all windows, tile windows, select next window. |
| Help | Application help and check for updates. |
The menus can be dynamically populated with new actions added by plugins. Check the Plugins documentation to learn how each plugin affects global and context menus.