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Alignment Editor

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Created by Yuliya Algaer, last modified on Feb 02, 2014

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Overview
Alignment Editor Features
Alignment Editor Components
Navigation
Coloring Schemes
Creating Custom Color Scheme
Highlighting Alignment
Zooming and Fonts
Searching for Pattern
Consensus
Export Consensus
Alignment Overview
Working with Alignment
Undo and Redo Framework
Selecting Subalignment
Moving Subalignment
Copying and Pasting Subalignment
Editing Alignment
Removing Selection
Filling Selection with Gaps
Replacing Selected Character
Replacing with Reverse-Complement
Replacing with Reverse
Replacing with Complement
Removing Columns of Gaps
Removing Sequence
Removing All Gaps
Saving Alignment
Aligning Sequences
Aligning Sequence to this Alignment
Pairwise Alignment
Working with Sequences List
Adding New Sequences
Renaming Sequences
Sorting Sequences
Shifting Sequences
Collapsing Rows
Copying Sequences
Exporting in Alignment
Extracting Selected as MSA
Exporting Sequence from Alignment
Exporting Alignment as Image
Importing APR and ACE Files
Statistics
Distance Matrix
Grid Profile
Advanced Functions
Building HMM Profile
Building Phylogenetic Tree
PHYLIP Neighbor-Joining
MrBayes
PhyML Maximum Likelihood

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