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Identification of transcription factor binding sites in the DNA which have been modified by polymorphic mutation.

Parameters in GUI

ParameterDescriptionDefault value
Database pathPath to SNPToolbox database with sequences, features and damage effect data. 
First site stateFirst sequence TFBS state.Normal (1.0)
Second site stateSecond sequence TFBS state.Weakened (0.5)
SNP significanceSignificance value for the SNP.0.00025

Parameters in Workflow File

Type: rSnp-tools

ParameterParameter in the GUIType
db_pathDatabase path

string

first_site_stateFirst site statenumeric
second_site_stateSecond site statenumeric
snp_significanceSNP significancenumeric

Input/Output Ports

The element has 1 input port:

Name in GUI: Input variations

Name in Workflow File: in-variations

Slots:

Slot In GUISlot in Workflow FileType
Variation trackvariation-trackvariation

And 1 output port:

Name in GUI: Output variations

Name in Workflow File: out-variations

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