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Trim input sequence from the end, using the quality threshold.

The element works on the basis of the following script:

Parameters in GUI

ParameterDescriptionDefault value
min_qualityNumber. 
min_sequence_lengthNumber. 

Parameters in Workflow File

Type: "Script-FASTQ Trimmer"

ParameterParameter in the GUIType
min_qualitymin_qualitynumeric
min_sequence_lengthmin_sequence_lengthnumeric

 

Input/Output Ports

The element has 1 input port:

Name in GUI: input data

Name in Workflow File: in

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence

And 1 output port:

Name in GUI: output data

Name in Workflow File: out

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence
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