Trim input sequence from the end, using the quality threshold.
The element works on the basis of the following script:
var trimmedSequence = getTrimmedByQuality(in_sequence, min_quality, min_sequence_length); if(size(trimmedSequence) != 0){ out_sequence = trimmedSequence; }else{ out_sequence = null; }
Parameters in GUI
Parameter | Description | Default value |
---|---|---|
min_quality | Number. | |
min_sequence_length | Number. |
Parameters in Workflow File
Type: "Script-FASTQ Trimmer"
Parameter | Parameter in the GUI | Type |
---|---|---|
min_quality | min_quality | numeric |
min_sequence_length | min_sequence_length | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: input data
Name in Workflow File: in
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Sequence | sequence | sequence |
And 1 output port:
Name in GUI: output data
Name in Workflow File: out
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Sequence | sequence | sequence |