Reads sequences and annotations if any from the Distributed Annotation System.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
Feature Sources | The DAS sources to read features from. | InterPro-Matches-Overview, Pride DAS 1.6, UniProt, cbs_sort, signalp |
Reference Sources | The DAS source to read reference from. | UniProt (DAS) |
| Resource ID(s) | Semicolon-separated list of resource ID`s in the source. | |
| Save file to directory | The directory to store sequence files loaded from the source. | default |
Parameters in Workflow File
Type: fetch-das
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| annotations | Feature Sources | string |
| database | Reference Sources | string |
| resource-id | Resource ID(s) | string |
| save-dir | Save file to directory | string |
Input/Output Ports
The element has 1 output port:
Name in GUI: Sequence
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table-list |
| Sequence | sequence | string |