Analyzes a nucleotide sequence with a UGENE Query Language (UQL) workflow. The workflow specifies a set of features to search for and their positional relationship.
To learn more about UQL workflows read UGENE Query Designer Manual.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Workflow (required) | UQL workflow file. | |
| Merge | Merges regions of each result into a single annotation. | False |
| Offset | If the Merge parameter is set to True, adds left and right offsets of the specified length to the annotation. | 0 |
Type: query
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| schema | Workflow | string |
| merge | Merge | boolean |
| offset | Offset | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input sequences
Name in Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: Result annotations
Name in Workflow File: out-annotations
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table |