Extract the coverage and bases count from the incoming assembly.
Parameters in GUI
| Output file | Location of output data file. If this attribute is set, slot "Location" in port will not be used. | assembly_coverage.txt |
| Export | Data type to export. | coverage |
| Treshold | The minimum coverage value to export. | 1 |
Parameter | Description | Default value |
|---|
Parameters in Workflow File
Type: extract-assembly-coverage
| url-out | Output file | string |
| export-type | Export | string |
| threshold | Treshold | numeric |
Parameter | Parameter in the GUI | Type |
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Input/Output Ports
The element has 1 input port:
Name in GUI: in-assembly
Name in Workflow File: in-assembly
Slots:
Assembly data | assembly | assembly |
Slot In GUI | Slot in Workflow File | Type |
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