Parses annotations to find any IDs and fetches corresponding sequences.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Save file to directory | The directory to store sequence files loaded from a database. | default |
| NCBI database | The database to read from. | nucleotide Available values are:
|
Parameters in Workflow File
Type: fetch-sequence
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| save-dir | Save file to directory | string |
| database | NCBI database | string |
The element has 1 input port:
Name in GUI: Input annotations
Name in Workflow File: in-annotations
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table |
And 1 output port:
Name in GUI: Sequence
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table |
| Sequence | sequence | sequence |