Output a table of genes found in a reference sequence.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Output file | File to store a report. | |
| Annotation name | Annotation name used to compare genes and reference genomes.. | blast-result |
| Existing file | If a target report already exists you should specify how to handle that. Merge two table in one. Overwrite or Rename existing file.. | Merge |
| Identity cutoff | Identity between gene sequence length and annotation length in per cent. BLAST identity (if specified) is checked after | 90.0000% |
Parameters in Workflow File
Type: genebygene-report-id
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| output-file | Output file | string |
| annotation_name | Annotation name | string |
| existing | Existing file | string |
| identity | Identity cutoff | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: Gene by gene report data
Name in Workflow File: in-data
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Input annotations | gene-ann | ann-table-list |
| Input sequences | gene-seq | seq |