Adds corresponding PHRED quality scores to the sequences. Use this element to convert .fasta and .qual pair to fastq format.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| PHRED input (required) | Path to a file with PHRED quality scores. | |
| Quality format | Format to encode quality scores. | Sanger |
Parameters in Workflow File
Type: import-phred-qualities
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| url-in | PHRED input | string |
| quality-format | Quality format | string Available values are:
|
Input/Output Ports
The element has 1 input port:
Name in GUI: DNA sequences
Name in Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: DNA sequences with imported quailities
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |