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NGS

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Created by Yuliya Algaer, last modified on Oct 22, 2013

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ChIP-Seq Coverage
ChIP-seq Analysis with Cistrome Tools
Extract Consensus from Assembly
Extract Coverage from Assembly
Extract Transcript Sequences
Quality Control by FastQC
De novo Assemble Illumina PE Reads
De novo Assemble Illumina PE and Nanopore Reads
De novo Assemble Illumina SE Reads
De Novo Assembly and Contigs Classification
Parallel NGS Reads Classification
Serial NGS Reads Classification
RNA-Seq Analysis with TopHat and StringTie
RNA-seq Analysis with Tuxedo Tools
Variation Annotation with SnpEff
Call Variants with SAMtools
Variant Calling and Effect Prediction
Raw ChIP-Seq Data Processing
Raw DNA-Seq Data Processing
Raw RNA-Seq Data Processing
Get Unmappet Reads

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