The element gets message(s) with annotations data and saves the data to the specified file(s) in one of the appropriate formats (GenBank, GTF, etc.).
Parameters in GUI
Parameter | Description | Default value |
---|---|---|
Data storage | Place to store workflow results: local file system or a database. | |
Output file | Location of the output data file. If this attribute is set, slot “Location” in port will not be used. | |
Output file suffix | This suffix will be used for generating the output file name. | |
Existing file | If a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format). | Rename |
Document format | Document format of output file. | genbank |
Annotations name | Object name of the annotations. | unknown feature |
CSV separator | String which separates values in CSV file(s). | ”,” (comma) |
Write sequence name | Write sequence to CSV file(s). | False |
Parameters in Workflow File
Type: write-annotations
Parameter | Parameter in the GUI | Type |
---|---|---|
data-storage | Data storage | string |
url-out | Output file | string |
url-suffix | Output file suffix | string |
write-mode | Existing file | numeric Available values are:
|
document-format | Document format | string Available values are:
|
annotations-name | Annotations name | string |
separator | CSV separator | string |
write_names | Write sequence name | boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input annotations
Name in Workflow File: in-annotations
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Set of annotations | annotations | annotation-table-list |
Sequence | sequence | sequence |
Source URL | url | string |