The element gets message(s) with variations data and saves the data to the specified file(s) in one of the appropriate formats (e.g. VCF).
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Data storage | Place to store workflow results: local file system or a database. | |
| Accumulate objects | Accumulate all incoming data in one file or create separate files for each input.In the latter case, an incremental numerical suffix is added to the file name. | True |
| Document format | Document format of output file. | snp |
| Output file | Location of output data file. If this attribute is set, slot "Location" in port will not be used. | |
| Output file suffix | This suffix will be used for generating the output file name. | |
| Existing file | If a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format). If Rename option is chosen existing file will be renamed. | Rename |
Parameters in Workflow File
Type: write-variations
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| data-storage | Data storage | split |
| accumulate | Accumulate objects | boolean |
| document-format | Document format | string |
| out-url | Output file | string |
| url-suffix | Output file suffix | string |
| write-mode | Existing file | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: Variation track
Name in Workflow File: in-variations
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Location | url | string |
| Variation track | variation-track | variation |