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<img src="/wiki/download/attachments/3244623/RNA-seq analysis with Tuxedo tools_1.png"/>
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Here you need to choose analysis type and short reads type and click Setup. There are two short reads type: single-end and paired-end reads. For both of them there are three analysis type:
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<center> <br> <img src="/wiki/download/attachments/3244623/RNA-seq analysis with Tuxedo tools_21.png"/> <br> </center> |
For Full Tuxedo Pipeline analysis type and paired-end reads type the following workflow appears:
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<center> <br> <img src="/wiki/download/attachments/3244623/RNA-seq analysis with Tuxedo tools_32.png"/> <br> </center> |
For Single-sample Tuxedo Pipeline analysis type and single-end reads type the following workflow appears:
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<center> <br> <img src="/wiki/download/attachments/3244623/RNA-seq analysis with Tuxedo tools_43.png"/> <br> </center> |
For Single-sample Tuxedo Pipeline analysis type and paired-end reads type the following workflow appears:
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<center> <br> <img src="/wiki/download/attachments/3244623/RNA-seq analysis with Tuxedo tools_54.png"/> <br> </center> |
For No-new-transcripts Tuxedo Pipeline analysis type and single-end reads type the following workflow appears:
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