Workflow Designer Documentation v. 1.26
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  • How to Use Sample Workflows
Title: How to Use Sample Workflows  
Author: Olga Golosova Oct 06, 2014
Last Changed by: Olga Golosova Oct 07, 2014
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Workflow Designer Documentation v. 1.26 (45)
    Page: Convert "seq/qual" Pair to FASTQ
    Page: Find Substrings in Sequences
    Page: Group Primer Pairs
    Page: Quality Filter
    Page: Extract Transcript Sequences
    Page: Search for TFBS
    Page: Build HMM from Alignment and test it
    Page: CASAVA FASTQ Filter
    Page: Filter Sequence That Match a Pattern
    Page: Variation Annotation with SnpEff
    Page: Get Amino Translations of a Sequence
    Page: Search for Transcription Factor Binding Sites (TFBS) in Genomic Sequences
    Page: FASTQ Trimmer
    Page: Convert Sequence to Genbank
    Page: Extract Consensus from Assembly
    Page: Dump Sequence Info
    Page: Remote BLASTing
    Page: Marking Sequences by Annotation Number
    Page: Extract Consensus as Sequence
    Page: Search for Inverted Repeats
    Page: Extract Coverage from Assembly
    Page: Intersect Annotations
    Page: Trim and Align Sanger Reads
    Page: ChIP-Seq Coverage
    Page: Align Sequences with MUSCLE
    Page: LinkData Fetch
    Page: ChIP-seq Analysis with Cistrome Tools
    Page: Extract Consensus as Text
    Page: De novo Assembly with Spades
    Page: Search Sequences with Profile HMM
    Page: Gene-by-gene Approach for Characterization of Genomes
    Page: In Silico PCR
    Page: Get Unmappet Reads
    Page: Raw DNA-Seq Data Processing
    Page: Raw ChIP-Seq Data Processing
    Page: RNA-seq Analysis with Tuxedo Tools
    Page: Marking Sequences by Length
    Page: Merge Sequences and Annotations
    Page: Call Variants with SAMtools
    Page: Find Patterns
    Page: Convert Alignments to ClustalW
    Page: Convert UQL Schema Results to Alignment
    Page: Merge Sequences and Shift Corresponding Annotations
    Page: Quality Control by FastQC
    Page: Raw RNA-Seq Data Processing
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    Page: Introduction
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Recent Changes
Time Editor  
Oct 07, 2014 15:03 Olga Golosova View Changes
Migrated to Confluence 5.3
Oct 07, 2014 15:03 Olga Golosova  
Outgoing Links
Workflow Designer Documentation v. 1.26 (4)     Page: Workflow Samples
    Page: About the Workflow Designer
    Page: Workflow Designer Window Components
    Page: Launching Workflow Designer