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Unipro UGENE User Manual v. 37
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Unipro UGENE User Manual v. 37
Unipro UGENE User Manual
Workflow Designer
Introduction
How to Use Sample Workflows
Page Information
Title:
How to Use Sample Workflows
Author:
Yuliya Algaer
Dec 03, 2020
Last Changed by:
Yuliya Algaer
Dec 03, 2020
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Unipro UGENE User Manual v. 37 (53)
Page:
Convert UQL Schema Results to Alignment
Page:
RNA-seq Analysis with Tuxedo Tools
Page:
FASTQ Trimmer
Page:
Quality Filter
Page:
Search for Inverted Repeats
Page:
Dump Sequence Info
Page:
Build HMM from Alignment and test it
Page:
Search for Transcription Factor Binding Sites (TFBS) in Genomic Sequences
Page:
Extract Consensus from Assembly
Page:
In Silico PCR Sample
Page:
Extract Coverage from Assembly
Page:
Serial NGS Reads Classification
Page:
Raw ChIP-Seq Data Processing
Page:
Trim and Align Sanger Reads
Page:
Find Substrings in Sequences
Page:
Marking by Annotation Number
Page:
Intersect Annotations
Page:
Raw RNA-Seq Data Processing
Page:
Get Amino Translations of a Sequence
Page:
Gene-by-gene Approach for Characterization of Genomes
Page:
CASAVA FASTQ Filter
Page:
Marking by Length
Page:
ChIP-Seq Coverage
Page:
Raw DNA-Seq Data Processing
Page:
Search Sequences with Profile HMM
Page:
Get Unmappet Reads
Page:
Parallel NGS Reads Classification
Page:
ChIP-seq Analysis with Cistrome Tools
Page:
Extract Consensus as Sequence
Page:
Find Patterns
Page:
Extract Consensus as Text
Page:
Quality Control by FastQC
Page:
Convert Alignments to ClustalW
Page:
Merge Sequences and Annotations
Page:
Convert Sequence to Genbank
Page:
Extract Transcript Sequences
Page:
LinkData Fetch
Page:
Remote BLASTing
Page:
Search for TFBS
Page:
De Novo Assembly and Contigs Classification
Page:
Align Sequences with MUSCLE
Page:
De novo Assemble Illumina PE and Nanopore Reads
Page:
Variation Annotation with SnpEff
Page:
Filter Sequence That Match a Pattern
Page:
Variant Calling and Effect Prediction
Page:
Call Variants with SAMtools
Page:
Convert "seq/qual" Pair to FASTQ
Page:
Filter out Short Sequences
Page:
RNA-Seq Analysis with TopHat and StringTie
Page:
Group Primer Pairs
Page:
Merge Sequences and Shift Corresponding Annotations
Page:
De novo Assemble Illumina SE Reads
Page:
De novo Assemble Illumina PE Reads
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Page:
Introduction
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Editor
Dec 03, 2020 00:58
Yuliya Algaer
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Outgoing Links
Unipro UGENE User Manual v. 37 (4)
Page:
About the Workflow Designer
Page:
Workflow Designer Window Components
Page:
Workflow Samples
Page:
Launching Workflow Designer
Overview
Content Tools
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