Extract the consensus sequence from the incoming assembly.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Algorithm | The algorithm of consensus extracting. | Default |
| Keep gaps | Set this parameter if the result consensus must keep the gaps. | True |
Parameters in Workflow File
Type: extract-consensus
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| algorithm | Algorithm | string |
| keep-gaps | Keep gaps | boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: in-assembly
Name in Workflow File: in-assembly
Slots:
Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
Assembly data | assembly | assembly |
And 1 outut port:
Name in GUI: out-sequence
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | string |