This workflow builds a new profile HMM from input alignment, calibrates the HMM and saves to a file. Then runs a test HMM search over sample sequence and saves test results to Genbank file.
How to Use This Sample
If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation.
Workflow Sample Location
The workflow sample "Build HMM from Alignment and test it" can be found in the "HMMER" section of the Workflow Designer samples.
Workflow Image
The workflow looks as follows:
Workflow Wizard
The wizard has 4 pages.
Input MSA(s): On this page you must input MSA(s).
Input sequence(s): On this page you must input sequence(s).
HMM build: On this page you can modify HMM build parameters.
HMM search: On this page you can modify HMM search and output parameters.
