Plots the PhastCons scores profiles.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Output file | File to store phastcons results (BMP). | |
| Title | Title of the figure (--title). | Average Phastcons around the Center of Sites |
| Label | Label of data in the figure (--bed-label). | Conservation_at_peak_summits |
| Assembly version | The directory to store phastcons scores (--phasdb). | hg19 |
| Window width | Window width centered at middle of regions (-w). | 1000 |
| Height | Height of plot (--height). | 1000 |
| Width | Width of plot (--width). | 1000 |
Parameters in Schema File
Type: conservation_plot-id
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| output-file | Output file | string |
| title | Title | string |
| label | Label | string |
| assembly_version | Assembly version | string |
| windos_s | Window width | numeric |
| height | Height | numeric |
| width | Width | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: conservation_plot data
Name in Schema File: in-data
Slots:
| Slot In GUI | Slot in Schema File | Type |
|---|---|---|
| Input regions | cp_treat-ann | ann-table-list |