The MSA overview will be showed automatically when you open an alignment. To close the MSA overview click on the Overview toolbar button. To show the simple MSA overview use the Show simple overview context menu item of the MSA overview.
The following settings of the MSA overview are available:
Export as image - you can export MSA overview and simple MSA overview as image. Use this context menu item to do it. In the following dialog select the required parameters and click on the Export button:
Dispaly settings:
Graph type - sets the graph type: histogram, line graph or area graph.
Orientation - sets the orientation: top to buttom or buttom to top.
Set color - sets the gpaph color.
Calculation method - sets the calculation method: strict, gaps, clustal or highlighting.
To use these settings go to the corresponding context menu items of the MSA overview.