The multiple alignment overview will be showed automatically when you open an alignment. To close the overview click on the Overview toolbar button. To show the simple multiple alignment overview use the Show simple overview context menu item of the overview.
The following settings of the multiple alignment overview are available:
Export as image - you can export multiple alignment overview and simple multiple alignment overview as image. Use this context menu item to do it. In the following dialog select the required parameters and click on the Export button:
Dispaly settings:
Graph type - sets the graph type: histogram, line graph or area graph.
Orientation - sets the orientation: top to buttom or buttom to top.
Set color - sets the gpaph color.
Calculation method - sets the calculation method: strict, gaps, clustal or highlighting.
To use these settings go to the corresponding context menu items of the multiple alignment overview.