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This sample describes how to search for TFBS with a different methods and how to write the results into one output file.

First, the workflow reads sequences input by a user. Then, each sequence goes to searching TFBS elements. At that time two reading elements reads the matrix and model for TFBS searching and transfering this data into TFBS searching elements. After that the TFBS searching elements searches TFBS in the input sequences. After that the two data flows multiplexes into one output data flow. And finally, the multiplexed data are written into file, specified by a user.

You can configure the parameters of Search for TFBS with Weight MatrixSearch TFBS with SITECON and Multiplexer elements.

To try out this sample, add the input files to the Read Sequence element, select the Read Weight MatrixRead SITECON model and select name and location of the output file in the Write Sequence element and run the workflow.

Also, if required, you can change parameters. Use the workflow wizard to guide you through the parameters setup process. The first wizard page will appear when you click on the Show wizard button on the Workflow Designer toolbar:


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