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  • FASTQ Trimmer Element

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Trim input sequence from the end, using the quality threshold.

The element works on the basis of the following script:

Code Block
var trimmedSequence = getTrimmedByQuality(in_sequence, min_quality, min_sequence_length);
if(size(trimmedSequence) != 0){
out_sequence = trimmedSequence;
}else{
out_sequence = null;
}

Parameters in GUI

ParameterDescriptionDefault value
min_qualityNumber. 
min_sequence_lengthNumber. 

Parameters in Workflow File

Type: "Script-FASTQ Trimmer"

ParameterParameter in the GUIType
report_pathmin_quality 
regulatory_report_pathmin_sequence_length 

 

Input/Output Ports

The element has 1 input port:

Name in GUI: input data

Name in Workflow File: in

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence

And 1 output port:

Name in GUI: output data

Name in Workflow File: out

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence