Trim input sequence from the end, using the quality threshold.
The element works on the basis of the following script:
var trimmedSequence = getTrimmedByQuality(in_sequence, min_quality, min_sequence_length);
if(size(trimmedSequence) != 0){
out_sequence = trimmedSequence;
}else{
out_sequence = null;
}
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| min_quality | Number. | |
| min_sequence_length | Number. |
Parameters in Workflow File
Type: "Script-FASTQ Trimmer"
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| report_path | min_quality | |
| regulatory_report_path | min_sequence_length |
Input/Output Ports
The element has 1 input port:
Name in GUI: input data
Name in Workflow File: in
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: output data
Name in Workflow File: out
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |