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Workflow Designer Documentation v. 1.17.0
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Introduction
How to Use Sample Workflows
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Workflow Designer Manual
Introduction
How to Use Sample Workflows
Page Information
Title:
How to Use Sample Workflows
Author:
Olga Golosova
Oct 06, 2014
Last Changed by:
Olga Golosova
Oct 07, 2014
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https://doc.ugene.net/wiki/x/gwL2
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Workflow Designer Documentation v. 1.17.0 (45)
Page:
CASAVA FASTQ Filter
Page:
Convert "seq/qual" Pair to FASTQ
Page:
Quality Filter
Page:
Extract Consensus as Sequence
Page:
Extract Transcript Sequences
Page:
Search for TFBS
Page:
Search for Transcription Factor Binding Sites (TFBS) in Genomic Sequences
Page:
Variation Annotation with SnpEff
Page:
Build HMM from Alignment and test it
Page:
RNA-seq Analysis with Tuxedo Tools
Page:
Convert Sequence to Genbank
Page:
Raw ChIP-Seq Data Processing
Page:
Group Primer Pairs
Page:
Merge Sequences and Annotations
Page:
Marking Sequences by Annotation Number
Page:
Extract Consensus from Assembly
Page:
Find Substrings at Sequences
Page:
Dump Sequence Info
Page:
Trim and Align Sanger Reads
Page:
FASTQ Trimmer
Page:
Search for Inverted Repeats
Page:
Remote BLASTing
Page:
Find Patterns
Page:
Gene-by-gene Approach for Characterization of Genomes
Page:
LinkData Fetch
Page:
Raw RNA-Seq Data Processing
Page:
ChIP-Seq Coverage
Page:
Align Sequences with MUSCLE
Page:
Extract Coverage from Assembly
Page:
Get Unmappet Reads
Page:
De novo Assembly with Spades
Page:
Search Sequences with Profile HMM
Page:
Extract Consensus as Text
Page:
ChIP-seq Analysis with Cistrome Tools
Page:
Quality Control by FastQC
Page:
Filter Sequence That Match a Pattern
Page:
Get Amino Translations of a Sequence
Page:
Merge Sequences and Shift Corresponding Annotations
Page:
Convert UQL Schema Results to Alignment
Page:
Intersect Annotations
Page:
Convert Alignments to ClustalW
Page:
Marking Sequences by Length
Page:
Call Variants with SAMtools
Page:
In Silico PCR
Page:
Raw DNA-Seq Data Processing
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Page:
Introduction
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Recent Changes
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Editor
Oct 07, 2014 15:03
Olga Golosova
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Migrated to Confluence 5.3
Oct 07, 2014 15:03
Olga Golosova
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Outgoing Links
Workflow Designer Documentation v. 1.17.0 (4)
Page:
Workflow Samples
Page:
About the Workflow Designer
Page:
Launching Workflow Designer
Page:
Workflow Designer Window Components
Overview
Content Tools
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