Write Annotations Element

The element gets message(s) with annotations data and saves the data to the specified file(s) in one of the appropriate formats (GenBank, GTF, etc.).

Element type: write-annotations

Parameters

Parameter	Description	Default value	Parameter in Workflow File	Type
Data storage	Place to store workflow results: local file system or a database.		data-storage	string
Output file	Location of the output data file. If this attribute is set, slot “Location” in port will not be used.		url-out	string
Output file suffix	This suffix will be used for generating the output file name.		url-suffix	string
Existing file	If a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format).	Rename	write-mode	numeric Available values are: 0 - for overwrite 1 - for append 2 - for rename
Document format	Document format of output file.	genbank	document-format	string Available values are: CSV GenBank GFF
Annotations name	Object name of the annotations.	unknown feature	annotations-name	string
CSV separator	String which separates values in CSV file(s).	”,” (comma)	separator	string
Write sequence name	Write sequence to CSV file(s).	False	write_names	boolean

The element has 1 input port:

Name in GUI: Input annotations

Name in Workflow File: in-annotations

Slots: